Whats New in SnapGene
- What's New in SnapGene 8.2
- SnapGene Domain Verification Guide
- What's New in SnapGene 8.1
- SnapGene Directory Sync (SCIM) Guide
- SnapGene Single Sign-On (SSO) Guide
- SnapGene 8.1 – Display of Stand Alone Files in the Side Panel
Installation and License Management
- Download, Install, and Activate SnapGene
- Activate SnapGene using SSO
- Unregister SnapGene
- Single Sign On (SSO) & User Provisioning (SCIM) Set Up Guides
- Manage a SnapGene Legacy Subscription or Permanent License
- Manage an Email Sign-In License
Preferences
- Open Full Screen Windows By Default
- Open Files in Separate Windows By Default
- Hide or Show the Info panel By Default
- Configure Dark Mode and Background Color
- Use Colorful Side Toolbar Icons
- Set the Background Color (SnapGene 6.0 and earlier)
Projects
Display Options for DNA Sequences
- Set View Options for DNA and RNA Sequences in Map and Sequence views
- Display a Circular Plasmid as a Linear (Horizontal) Map
- Show or Hide DNA Feature Labels
- Show or Hide Restriction Site or Primer Coordinates on a Map
- Show Features on the Line
- Display a DNA Sequence Minimap
Display Options for Protein Sequences
- View Options for Protein Sequences
- Show or Hide Protein Features
- Customize Protein Sequence Colors
- Show, Hide or Set Protein Colors
- Hide or Show Protein Region Labels
- Show or Hide Protein Feature Numbering in Map View
Other Display Options
- Show or Hide the Toolbars
- Change the Font Size
- View a Sequence with a Split Window
- View Sequence Traces with Color Vision Disabilities
- Show a Plot of GC Content
- View a Sanger Trace File
Description Panel
Enzymes
- Show or Hide All Enzymes Sites
- Show or Hide Individual Enzymes
- Choose an Enzyme Set
- Choose Enzymes Manually
- Highlight an Enzyme Site
- Display a Restriction Site Overview
Features
- Create a Simple Feature
- Create a Translated Feature
- Adjust Translated Feature Numbering
- Create a Feature Segment on a Nucleotide Sequence
- Annotate Introns
- Add a Cleavage Arrow
Custom Feature Types (SnapGene 6.0 and later)
Primers
- Create a Primer
- Create a Primer (SnapGene 6.2 and earlier)
- Edit Multiple Primers
- Adjust Primer Hybridization Parameters
- Show or Hide Primers
- Show or Hide Primer Details in Primers View
Translations
Colors
Searching
Focus on Region (aka Zoom)
History
RNA
Proteins
- Create a Protein Sequence
- Import a Protein Sequence
- Make a Protein Sequence from a DNA Sequence
- Show Protein Properties
- Export Protein Properties
- Add an Intramolecular Bond to a Protein Sequence
Restriction Cloning and Linear Ligation
- Insert a Restriction Fragment into a Plasmid
- Insert Multiple Restriction Fragments into a Plasmid
- Delete Restriction Fragment
- Destroy a Restriction Site
- Linear Ligation
- Golden Gate Assembly in Older Versions of SnapGene
Gateway Cloning®
Gibson Assembly®
Golden Gate Assembly
- Golden Gate Cloning of a Single Fragment into a Vector
- Golden Gate Cloning of Multiple Fragments into a Vector with Type IIS Sites
- Golden Gate Cloning of Multiple Fragments into a Vector with no Type IIS sites
- Golden Gate Cloning into a Vector Cut with non-Type IIS Enzymes
- How is Golden Gate Fidelity Predicted in SnapGene?
- Set the Enzymes for Golden Gate Assembly
NEBuilder HiFi DNA Assembly®
In-Fusion® Cloning
TA or GC Cloning
TOPO® Cloning
PCR and Mutagenesis
Agarose Gel Simulation
- Create an Agarose Gel
- Simulate a PCR Product on an Agarose Gel
- Simulate a Restriction Digest
- Choose a MW Marker
- Set the Default MW marker on an Agarose Gel
- Customise the MW marker List
Collections
- Show Hidden Collections Functionality (SnapGene 7.0 and later)
- Make a New Collection
- Collection Areas
- Designate a Main Collection
- Open a Collection
- Add Files to a Collection
Batch Operations
Importing and Exporting
- Import a Sequence from NCBI
- Import a Multi-sequence FASTA or GenBank File
- Import a Multisequence FASTA or GenBank File as a Collection (SnapGene 6.2 or Earlier)
- Import a Published Plasmid Sequence
- Import a Vector NTI Database
- Import Features from a GTF, GFF3, or BED File
Editing Sequences
- Create a New DNA, RNA or Protein Sequence
- Create a New DNA or RNA Sequence (SnapGene 6.2.2 or earlier)
- Edit a DNA or RNA sequence
- Edit a Sanger Trace File
- Edit DNA Ends
- Circularize or Linearize a DNA Sequence
Assembly and Alignment
Pairwise and Multiple Alignment
- Create a Pairwise DNA Alignment
- Create a Pairwise Protein Alignment
- Create a Multiple Sequence Alignment
- Reorder or Rename Sequences in a Multiple Alignment
- Repeat an Alignment with an Alternative Algorithm, New Parameters or Changed Input
- Convert a DNA Alignment to a Protein Alignment
Single Stranded Sequences
Nucleic Acid Secondary Structure
Designing Sequences
- Design a Synthetic Construct
- Insert a Restriction Enzyme Site into a Sequence
- Insert Codons into a Sequence
- Insert a Feature into a Sequence
- Order a Synthetic Sequence
- Insert a Back-Translated Protein into a DNA Sequence