How do I export the consensus sequence from a DNA or Proetin multiple alignment?
Create or Open a Multiple Alignment file
Open, import or create a multiple sequence alignment file.
Set the desired theshold for the consensus in the "Side Panel".
Export the Consensus in FASTA format
Click File → Export → Consensus.
Set the name of the exported consensus sequence.
Set the export location, then click Save to save the FASTA format file to an appropriate location on your computer.