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Alignment and Assembly

  • What Alignment and Assembly tools are Available in SnapGene?
  • Can SnapGene Assemble Illumina or NGS reads?
  • Does SnapGene have a Map to Reference Assembler?
  • What alignment algorithm is used for "Align to Reference Sequence" tool?
  • How do I Interpret the Align to Reference Map View?
  • How does SnapGene calculate conservation scores for a protein multiple alignment?
  • What are the SnapGene Protein Alignment Color Highlighting Schemes?
  • What are the Ranges for Protein Alignment Conservation Scores?
  • Does SnapGene have tools for building or viewing phylogenetic trees?
  • What Does the Sequence Logo represent in a Nucleotide Multiple Alignment?
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