Does SnapGene have tools for building or viewing phylogenetic trees? November 02, 2022 04:04 SnapGene does not have tools for building phylogenetic trees or for displaying tree files. SnapGene can create multiple alignments that can be exported and used as input for phylogenetic analysis using other software, for example, Geneious Prime, or MEGA. To export alignments, create or open a SnapGene Alignment file and click File → Export → Alignment and choose from one of the available alignment formats. Related articles Create a Multiple Sequence Alignment What alignment algorithm is used for "Align to Reference Sequence" tool? What are the Ranges for Protein Alignment Conservation Scores? How does SnapGene calculate conservation scores for a protein multiple alignment? Can SnapGene Assemble Illumina or NGS reads?